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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
14
total RNA-seq
2
Hi-C
2
STARR-seq
2
pCHi-C
1
WGBS
1
whole genome sequencing assay
Assay category
14
Transcription
2
3D chromatin structure
DNA accessibility
1
DNA methylation
1
DNA sequencing
Date released
13
August, 2021
5
January, 2019
1
December, 2018
1
February, 2021
1
May, 2020
1
November, 2018
Available data
15
tsv
7
fastq
6
bam
6
bigWig
1
bed bed3+
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
1
vcf
Organism
22
Homo sapiens
Biosample type
22
cell line
Organ
22
liver
Project
22
AMP
Genome assembly (visualization)
7
hg19
6
GRCh38
Lab
13
Bing Ren, UCSD
9
AMP-T2D consortium
assay_slims!
DNA accessibility
assay_title!
ChIP-seq
files.file_type!
hdf5
BIOSAMPLE
ASSAY
22 results
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total RNA-seq
Hi-C
STARR-seq
pCHi-C
WGBS
whole genome sequencing assay
cell line
HepG2
14
2
2
2
1
1
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