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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
103
total RNA-seq
16
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
103
Transcription
DNA accessibility
Date released
74
May, 2021
45
May, 2020
5
February, 2023
Available data
98
bigWig
96
bam
96
tsv
2
bed bed3+
Organism
124
Homo sapiens
Biosample type
114
primary cell
tissue
5
cell line
5
in vitro differentiated cells
Organ
1
bone element
1
bone marrow
1
connective tissue
Project
117
T1D
7
AMP
Genome assembly (visualization)
98
hg19
96
GRCh38
Lab
297
AMP-T2D consortium
124
Kyle Gaulton, UCSD
95
Klaus Kaestner, Upenn
16
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
2
Struan F.A. Grant, CHOP
1
ITG
0
Xin Sun, UCSD
Audit category:
5
inconsistent ontology term
assay_slims!
DNA accessibility
assay_title!
ChIP-seq
biosample_type!
tissue
files.file_type!
fastq
BIOSAMPLE
ASSAY
124 results
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total RNA-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
1
CD8-positive, alpha-beta T cell
4
1
B cell
2
1
naive B cel
2
1
naive thymus-derived CD8-positive, alpha-beta T cell
2
1
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cell line
EndoC_BH1
3
2
in vitro differentiated cells
embryonic stem cell
5
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