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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
1144
total RNA-seq
180
single cell RNA-seq
87
RNA microarray
31
pCHi-C
28
WGBS
20
Hi-C
16
small RNA-seq
11
RRBS
10
MeRIP-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
1342
Transcription
DNA accessibility
39
DNA methylation
20
3D chromatin structure
1
DNA sequencing
Target of assay
5
control
5
nucleotide modification
Date released
616
February, 2021
185
August, 2021
144
May, 2020
120
July, 2018
103
August, 2017
69
July, 2019
47
September, 2023
44
March, 2020
44
May, 2021
32
October, 2019
27
May, 2022
25
February, 2020
22
November, 2019
20
February, 2023
10
November, 2020
9
April, 2020
7
November, 2018
6
April, 2018
5
January, 2019
4
May, 2023
3
December, 2019
2
March, 2023
1
December, 2018
1
March, 2019
1
October, 2022
Available data
1193
tsv
1045
bam
1039
bigWig
157
txt
123
fastq
26
bed bedMethyl
26
bigBed bedMethyl
13
hic
12
bedpe bed3+
6
csv
2
bed bed3+
1
bedpe
1
hdf5
1
vcf
Organism
1542
Homo sapiens
Biosample type
1400
tissue
521
primary cell
151
in vitro differentiated cells
147
cell line
7
stem cell
Organ
465
connective tissue
407
adipose tissue
350
pancreas
203
liver
176
heart
146
bone element
130
kidney
69
blood vessel
69
vasculature
56
artery
47
epithelium
24
brain
23
eye
19
musculature of body
12
limb
10
lung
8
embryo
5
nerve
4
skeleton
3
spleen
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1474
AMP
47
KPMP
15
T1D
9
LungMap
2
community
Genome assembly (visualization)
1046
hg19
1040
GRCh38
Lab
1361
AMP-T2D consortium
61
Katalin Susztak, Upenn
47
KPMP
20
Karen Mohlke, UNC
19
Bing Ren, UCSD
18
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
9
Xin Sun, UCSD
2
Anna Gloyn, Oxford
Audit category:
135
inconsistent ontology term
7
audit script error
Audit category:
1
inconsistent assembly
assay_slims!
DNA accessibility
assay_title!
ChIP-seq
lab.title!
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
1547 results
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Clear Filters
total RNA-seq
single cell RNA-seq
RNA microarray
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
MeRIP-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
snDrop-seq
Capture-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
tissue
adipose tissue
382
1
3
islet of Langerhans
292
6
4
3
1
4
liver
167
1
1
3
1
1
1
kidney
49
64
1
1
bone element
84
+ See 75 more…
cell line
smooth muscle cell of the coronary artery
52
EndoC_BH1
33
1
6
3
2
2
1
HepG2
14
2
1
2
2
1
H1-hESC
8
EndoC-BH1
1
1
+ See 12 more…
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