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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
330
total RNA-seq
ChIP-seq
80
single cell RNA-seq
4
WGBS
2
small RNA-seq
Assay category
412
Transcription
DNA accessibility
4
DNA methylation
Date released
153
July, 2018
89
August, 2017
40
May, 2021
39
April, 2018
26
February, 2021
26
September, 2018
20
November, 2019
6
May, 2022
4
July, 2019
4
November, 2018
3
August, 2018
3
March, 2020
2
October, 2018
1
June, 2018
Available data
416
bam
415
tsv
411
bigWig
263
fastq
41
zippedFastqFolder
7
bedpe bed3+
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bed bed3+
1
bedpe
1
hdf5
Organism
416
Homo sapiens
Biosample type
281
tissue
102
primary cell
33
cell line
Organ
477
connective tissue
416
pancreas
400
adipose tissue
163
liver
146
epithelium
76
heart
60
blood vessel
60
vasculature
58
bone element
54
artery
14
embryo
12
brain
12
kidney
7
musculature of body
5
limb
4
nerve
2
spleen
1
pericardium
Project
414
AMP
2
T1D
Genome assembly (visualization)
410
GRCh38
406
hg19
Lab
410
AMP-T2D consortium
6
Kyle Gaulton, UCSD
Audit category:
38
inconsistent ontology term
assay_slims!
DNA accessibility
assay_title!
ChIP-seq
files.file_type!
bed bed3
BIOSAMPLE
ASSAY
416 results
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total RNA-seq
single cell RNA-seq
WGBS
small RNA-seq
tissue
islet of Langerhans
266
6
body of pancreas
2
2
2
pancreas
1
2
primary cell
pancreatic alpha cell
10
12
pancreatic beta cell
10
12
pancreatic acinar cell
4
12
pancreatic ductal cell
4
10
pancreatic delta cell
11
+ See 4 more…
cell line
EndoC_BH1
33
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