Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • ChIP-seq
  • 1527total RNA-seq
  • 369single cell RNA-seq
  • 87RNA microarray
  • 75WGBS
  • 57pCHi-C
  • 34Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 10MeRIP-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 1918Transcription
  • DNA accessibility
  • 97DNA methylation
  • 343D chromatin structure
  • 1DNA sequencing
Target of assay
  • 8control
  • 5nucleotide modification
Date released
  • 658February, 2021
  • 200May, 2021
  • 194August, 2021
  • 191May, 2020
  • 168July, 2018
  • 104August, 2017
  • 101May, 2022
  • 100February, 2023
  • 100July, 2019
  • 57March, 2020
  • 56September, 2020
  • 49April, 2018
  • 47September, 2023
  • 39October, 2019
  • 27September, 2018
  • 25February, 2020
  • 22November, 2019
  • 15February, 2018
  • 14November, 2020
  • 10December, 2019
  • 9April, 2020
  • 8November, 2018
  • 5January, 2018
  • 5January, 2019
  • 5March, 2023
  • 4August, 2018
  • 4May, 2023
  • 4October, 2022
  • 3June, 2018
  • 2October, 2018
  • 1December, 2018
  • 1March, 2019
Available data
  • 1586tsv
  • 1429bigWig
  • 1425bam
  • 399fastq
  • 157txt
  • 93zippedFastqFolder
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 11bed bed3+
  • 8csv
  • 5hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1vcf
Organism
  • 2221Homo sapiens
Biosample type
  • 1400tissue
  • 521primary cell
  • 153in vitro differentiated cells
  • 147cell line
  • 7stem cell
Organ
  • 555pancreas
  • 497connective tissue
  • 410adipose tissue
  • 272epithelium
  • 210liver
  • 182heart
  • 147bone element
  • 139kidney
  • 76vasculature
  • 75blood vessel
  • 58artery
  • 31brain
  • 24eye
  • 22musculature of body
  • 15embryo
  • 12limb
  • 10lung
  • 5nerve
  • 4skeleton
  • 3spleen
  • 2intestine
  • 2pericardium
  • 2thymus
  • 2vein
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1mammary gland
  • 1ovary
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 1813AMP
  • 227HPAP
  • 127T1D
  • 47KPMP
  • 9LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 1455hg19
  • 1420GRCh38
  • 5hg18
Lab
  • 1691AMP-T2D consortium
  • 227Klaus Kaestner, Upenn
  • 137Kyle Gaulton, UCSD
  • 61Katalin Susztak, Upenn
  • 47KPMP
  • 20Karen Mohlke, UNC
  • 19Bing Ren, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 9Xin Sun, UCSD
  • 4Anna Gloyn, Oxford
  • 2Struan F.A. Grant, CHOP
  • 1ITG
Audit category:
  • 248inconsistent ontology term
  • 13audit script error
Audit category:
  • 1inconsistent assembly
assay_slims!
  • DNA accessibility
assay_title!
  • ChIP-seq
BIOSAMPLE
ASSAY

2228 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
MeRIP-seq
GRO-seq
STARR-seq
Capture-C
CRISPR genome editing followed by DNA sequencing
snDrop-seq
HiChIP
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
CRISPRi RNA-seq
DNAme array
MPRA
...and 3 more
tissue
adipose tissue38231
islet of Langerhans29264314
liver167131111
kidney496411
bone element84
primary cell
pancreatic alpha cell5212311
Langerhans cell85
monocyte5411
pancreatic beta cell2112161
exocrine cell39
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)191
cardiomyocytes (cardiac muscle cell)3222
induced pluripotent stem cell9
embryonic stem cell71
cell line
smooth muscle cell of the coronary artery52
EndoC_BH133162321
HepG2141222
H1-hESC8
EndoC-BH1
stem cell
SB Ad3.111
hESC1
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego