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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ChIP-seq
15
total RNA-seq
2
Capture-C
2
Hi-C
Assay category
29
DNA binding
15
Transcription
DNA accessibility
2
3D chromatin structure
Target of assay
18
histone
18
histone modification
11
narrow histone mark
11
transcription factor
7
broad histone mark
1
RNA binding protein
Date released
552
February, 2021
298
May, 2021
281
November, 2017
266
August, 2017
215
May, 2020
199
October, 2019
164
July, 2018
97
May, 2019
84
July, 2019
77
December, 2017
65
April, 2019
61
November, 2018
58
September, 2018
49
April, 2018
48
August, 2021
47
October, 2018
33
November, 2019
31
February, 2018
30
December, 2018
28
March, 2020
26
January, 2019
23
June, 2019
6
October, 2017
5
December, 2019
4
November, 2020
3
August, 2018
3
June, 2018
3
October, 2022
2
September, 2017
1
March, 2019
1
May, 2023
Available data
44
bigWig
30
bam
29
bed narrowPeak
15
tagAlign
15
tsv
5
bed bed3+
2
hic
1
bedpe bed3+
Organism
48
Homo sapiens
Biosample type
23
cell line
21
in vitro differentiated cells
3
primary cell
1
tissue
Organ
18
liver
8
embryo
3
epithelium
2
connective tissue
1
kidney
Project
48
AMP
Genome assembly (visualization)
48
hg19
31
GRCh38
Lab
30
AMP-T2D consortium
15
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
1
Katalin Susztak, Upenn
assay_slims!
DNA accessibility
assay_title!
DNAme array
files.file_type!
bed bed3
BIOSAMPLE
ASSAY
48 results
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Clear Filters
ChIP-seq
total RNA-seq
Capture-C
Hi-C
cell line
HepG2
14
1
H1-hESC
8
in vitro differentiated cells
neural progenitor cell
12
7
adipocyte
1
osteoblast
1
primary cell
hepatocyte
3
tissue
kidney
1
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