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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
317
ChIP-seq
174
single cell RNA-seq
135
total RNA-seq
87
RNA microarray
25
pCHi-C
16
Hi-C
11
RRBS
11
WGBS
4
MeRIP-seq
3
snDrop-seq
Assay category
317
DNA binding
309
Transcription
DNA accessibility
22
DNA methylation
16
3D chromatin structure
Target of assay
184
control
134
histone
134
histone modification
73
narrow histone mark
61
broad histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
159
August, 2021
124
August, 2017
93
February, 2021
67
October, 2019
47
September, 2023
31
May, 2020
29
March, 2020
29
October, 2018
27
May, 2022
25
February, 2020
25
November, 2017
23
May, 2019
16
April, 2019
14
February, 2023
14
July, 2019
12
December, 2017
9
April, 2020
9
October, 2017
4
December, 2018
4
July, 2018
4
November, 2020
4
September, 2017
3
December, 2019
3
May, 2023
3
November, 2018
2
May, 2021
1
January, 2019
1
March, 2019
1
November, 2019
Available data
181
bam
158
tsv
156
txt
122
tagAlign
76
fastq
31
bed narrowPeak
31
bigWig
21
bed broadPeak
11
hic
10
bedpe bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
csv
1
bedpe
1
bigBed narrowPeak
Organism
781
Homo sapiens
Biosample type
783
tissue
340
primary cell
179
cell line
104
in vitro differentiated cells
7
stem cell
Organ
127
kidney
122
heart
102
liver
88
bone element
70
pancreas
64
connective tissue
63
adipose tissue
59
brain
38
musculature of body
28
blood vessel
28
vasculature
26
limb
25
eye
12
nerve
11
artery
10
lung
9
spleen
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
719
AMP
47
KPMP
9
LungMap
8
T1D
Genome assembly (visualization)
GRCh38
1467
hg19
Lab
626
AMP-T2D consortium
61
Katalin Susztak, Upenn
47
KPMP
20
Karen Mohlke, UNC
13
Kyle Gaulton, UCSD
9
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
87
inconsistent ontology term
7
audit script error
Audit category:
1
missing controlled_by
assay_slims!
DNA accessibility
assay_title!
DNase-seq
assembly!
GRCh38
BIOSAMPLE
ASSAY
783 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
RNA microarray
pCHi-C
Hi-C
RRBS
WGBS
MeRIP-seq
snDrop-seq
tissue
kidney
7
64
49
1
1
liver
70
1
20
1
1
1
3
islet of Langerhans
46
32
4
3
1
4
bone element
84
subcutaneous abdominal adipose tissue
36
3
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