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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
total RNA-seq
10
ChIP-seq
1
GRO-seq
Assay category
14
Transcription
10
DNA binding
Target of assay
12
histone
histone modification
8
narrow histone mark
7
control
4
broad histone mark
3
transcription factor
Date released
8
August, 2021
7
December, 2017
7
February, 2018
2
May, 2021
1
January, 2018
Available data
24
bam
18
bigWig
15
fastq
14
tsv
3
bed narrowPeak
1
bed bed3+
Organism
25
Homo sapiens
Biosample type
17
in vitro differentiated cells
8
cell line
Organ
622
pancreas
615
liver
572
connective tissue
451
adipose tissue
306
epithelium
219
heart
161
kidney
147
bone element
105
vasculature
103
blood vessel
72
artery
59
blood
59
bodily fluid
59
brain
29
limb
28
musculature of body
26
eye
25
embryo
17
spleen
16
nerve
10
lung
4
skeleton
4
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
25
AMP
Genome assembly (visualization)
18
GRCh38
18
hg19
1
hg18
Lab
25
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
inconsistent control read length
assay_slims!
DNA accessibility
assay_title!
DNase-seq
files.file_type!
bed broadPeak
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
25 results
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Clear Filters
total RNA-seq
ChIP-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
4
8
1
Hepatic endoderm
2
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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