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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1026
total RNA-seq
878
ChIP-seq
179
single cell RNA-seq
87
RNA microarray
26
WGBS
24
pCHi-C
15
small RNA-seq
Hi-C
7
RRBS
4
MeRIP-seq
3
snDrop-seq
Assay category
1220
Transcription
878
DNA binding
DNA accessibility
33
DNA methylation
Target of assay
603
histone modification
602
histone
315
narrow histone mark
287
broad histone mark
183
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
537
February, 2021
253
August, 2017
221
October, 2019
193
May, 2020
157
August, 2021
120
July, 2018
108
May, 2019
82
November, 2017
80
April, 2019
74
October, 2018
62
July, 2019
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
28
March, 2020
26
May, 2022
23
February, 2020
19
November, 2019
16
November, 2018
15
October, 2017
14
February, 2023
9
April, 2020
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
May, 2023
4
November, 2020
3
December, 2019
Available data
1650
bam
1524
bigWig
1068
tsv
576
bed narrowPeak
371
bigBed narrowPeak
334
fastq
223
tagAlign
156
txt
28
bed bed3+
22
bed bedMethyl
22
bed broadPeak
22
bigBed bedMethyl
6
csv
1
tagAlign bed3+
Organism
2241
Homo sapiens
Biosample type
2249
tissue
777
primary cell
567
cell line
347
in vitro differentiated cells
10
stem cell
Organ
539
connective tissue
480
adipose tissue
419
pancreas
335
liver
244
heart
233
brain
148
kidney
146
bone element
89
blood vessel
89
vasculature
74
limb
musculature of body
40
nerve
32
artery
25
eye
23
spleen
10
lung
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2183
AMP
47
KPMP
10
T1D
9
LungMap
Genome assembly (visualization)
1514
GRCh38
1431
hg19
Lab
2055
AMP-T2D consortium
60
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
13
Kyle Gaulton, UCSD
9
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Bing Ren, UCSD
Audit category:
89
inconsistent ontology term
27
inconsistent control
7
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_slims!
DNA accessibility
assay_title!
Hi-C
organ_slims!
blood
musculature of body
BIOSAMPLE
ASSAY
2249 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
2
3
1
islet of Langerhans
292
71
6
4
1
4
liver
167
145
1
3
1
1
1
kidney
49
27
64
1
bone element
84
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