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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
ChIP-seq
99
total RNA-seq
6
MeRIP-seq
4
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
2
Capture-C
2
Hi-C
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
106
DNA binding
101
Transcription
DNA accessibility
2
3D chromatin structure
Target of assay
64
transcription factor
23
control
20
histone
20
histone modification
11
RNA binding protein
10
broad histone mark
10
chromatin remodeller
10
narrow histone mark
7
recombinant protein
3
nucleotide modification
Date released
86
February, 2021
28
October, 2019
27
December, 2018
18
January, 2019
15
November, 2018
15
November, 2019
13
August, 2021
9
March, 2020
6
November, 2020
5
May, 2021
4
February, 2023
2
March, 2023
1
October, 2022
Available data
205
bam
185
bigWig
103
tsv
85
bed narrowPeak
60
bigBed narrowPeak
60
fastq
8
tagAlign
1
bed bed3+
1
bedpe bed3+
1
hdf5
1
hic
1
txt
Organism
225
Homo sapiens
Biosample type
1971
tissue
789
primary cell
336
in vitro differentiated cells
229
cell line
10
stem cell
Organ
liver
72
pancreas
60
blood
60
bodily fluid
59
epithelium
58
artery
58
blood vessel
58
heart
58
vasculature
18
kidney
8
embryo
1
mammary gland
Project
220
AMP
7
T1D
2
community
Genome assembly (visualization)
186
hg19
185
GRCh38
Lab
215
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
3
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
Audit category:
73
inconsistent ontology term
1
inconsistent control
Audit category:
1
inconsistent assembly
assay_slims!
DNA accessibility
assay_title!
HiChIP
organ_slims!
liver
BIOSAMPLE
ASSAY
229 results
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Clear Filters
ChIP-seq
total RNA-seq
MeRIP-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
STARR-seq
Capture-C
Hi-C
CRISPR genome editing followed by sgRNA sequencing
MPRA
shRNA RNA-seq
siRNA RNA-seq
cell line
EndoC_BH1
15
33
6
3
2
1
1
GM12878
60
smooth muscle cell of the coronary artery
6
52
Panc1
13
1
H1-hESC
8
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