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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
13
ChIP-seq
2
single cell RNA-seq
Assay category
58
Transcription
DNA accessibility
13
DNA binding
Target of assay
9
control
4
transcription factor
Date released
58
February, 2021
5
October, 2019
2
August, 2021
2
February, 2020
2
July, 2019
2
May, 2019
Available data
88
bam
79
bigWig
58
tsv
25
bed narrowPeak
bigBed narrowPeak
6
tagAlign
Organism
71
Homo sapiens
Biosample type
58
cell line
11
tissue
2
primary cell
Organ
714
pancreas
635
connective tissue
477
adipose tissue
410
liver
365
epithelium
252
heart
167
kidney
155
brain
147
bone element
107
vasculature
105
blood vessel
71
artery
47
musculature of body
37
embryo
30
limb
27
eye
16
nerve
11
spleen
10
lung
9
vein
6
blood
6
bodily fluid
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
71
AMP
Genome assembly (visualization)
58
GRCh38
58
hg19
Lab
71
AMP-T2D consortium
assay_slims!
DNA accessibility
assay_title!
HiChIP
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
71 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
6
tissue
tibial artery
1
5
coronary artery
1
2
pulmonary artery
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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