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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
ChIP-seq
93
single cell RNA-seq
69
total RNA-seq
8
WGBS
3
Hi-C
3
pCHi-C
1
RRBS
1
small RNA-seq
Assay category
163
Transcription
129
DNA binding
DNA accessibility
9
DNA methylation
3
3D chromatin structure
Target of assay
95
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
18
control
16
transcription factor
10
RNA binding protein
Date released
92
August, 2021
58
February, 2021
57
April, 2019
40
May, 2024
21
May, 2019
18
July, 2019
8
October, 2019
7
March, 2020
3
February, 2020
2
May, 2021
1
February, 2023
Available data
184
bigWig
165
tsv
161
bam
111
bed narrowPeak
61
bigBed narrowPeak
7
bed bedMethyl
7
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
307
Homo sapiens
Biosample type
247
tissue
58
cell line
2
primary cell
Organ
773
pancreas
762
liver
connective tissue
483
adipose tissue
401
epithelium
316
heart
249
brain
191
kidney
178
vasculature
174
blood vessel
147
bone element
92
artery
78
limb
61
musculature of body
60
blood
60
bodily fluid
40
nerve
37
embryo
29
eye
23
spleen
19
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
307
AMP
Genome assembly (visualization)
183
GRCh38
142
hg19
Lab
267
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
assay_slims!
DNA accessibility
assay_title!
HiChIP
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
307 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
35
18
3
4
1
1
1
left cardiac atrium
40
18
heart right ventricle
13
17
1
2
1
1
right cardiac atrium
6
18
1
1
heart
14
1
4
1
1
1
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cell line
smooth muscle cell of the coronary artery
6
52
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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