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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
95
ChIP-seq
7
WGBS
1
single cell RNA-seq
Assay category
95
DNA binding
DNA accessibility
7
DNA methylation
1
Transcription
Target of assay
78
transcription factor
27
RNA binding protein
16
recombinant protein
13
chromatin remodeller
10
control
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
3
other context
3
other post-translational modification
Date released
406
November, 2017
311
August, 2017
265
October, 2019
192
May, 2021
120
May, 2019
114
August, 2021
107
February, 2021
101
May, 2022
96
February, 2023
94
December, 2017
80
April, 2019
78
November, 2018
74
October, 2018
56
September, 2020
52
May, 2020
47
September, 2023
40
May, 2024
35
December, 2018
35
July, 2019
33
September, 2018
31
June, 2019
25
January, 2019
24
February, 2018
17
March, 2020
15
November, 2019
15
October, 2017
9
April, 2020
6
September, 2017
5
January, 2018
5
March, 2023
4
July, 2018
4
May, 2023
4
October, 2022
1
August, 2018
1
December, 2019
1
March, 2019
Available data
108
fastq
107
bam
96
bigWig
84
bed narrowPeak
84
bigBed narrowPeak
7
bed bedMethyl
7
bigBed bedMethyl
tsv
1
csv
Organism
103
Homo sapiens
Biosample type
79
cell line
23
tissue
1
primary cell
Organ
50
liver
33
blood
33
bodily fluid
15
spleen
4
pancreas
Project
103
AMP
Genome assembly (visualization)
91
GRCh38
82
hg19
Lab
103
AMP-T2D consortium
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_slims!
DNA accessibility
assay_title!
MeRIP-seq
files.file_type!
tsv
BIOSAMPLE
ASSAY
103 results
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Clear Filters
ChIP-seq
WGBS
single cell RNA-seq
cell line
HepG2
45
1
GM12878
33
tissue
spleen
13
2
liver
4
body of pancreas
2
pancreas
2
primary cell
pancreatic cell
1
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