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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
41
single cell RNA-seq
7
WGBS
Assay category
70
DNA binding
41
Transcription
DNA accessibility
7
DNA methylation
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
6
control
3
other context
3
other post-translational modification
Date released
634
February, 2021
400
November, 2017
374
August, 2017
355
May, 2021
253
October, 2019
241
May, 2020
231
August, 2021
135
July, 2018
115
May, 2019
87
July, 2019
80
April, 2019
78
November, 2018
75
December, 2017
74
October, 2018
60
February, 2023
60
May, 2022
56
March, 2020
47
September, 2023
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
25
June, 2019
20
November, 2019
16
April, 2018
15
October, 2017
12
September, 2018
9
April, 2020
6
September, 2017
5
January, 2018
5
March, 2023
4
December, 2019
4
May, 2023
4
November, 2020
2
June, 2018
1
August, 2018
1
March, 2019
1
October, 2022
Available data
100
fastq
77
bam
70
bigWig
63
bed narrowPeak
63
bigBed narrowPeak
19
zippedFastqFolder
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
118
Homo sapiens
Biosample type
61
cell line
41
primary cell
16
tissue
Organ
50
liver
20
pancreas
epithelium
15
blood
15
bodily fluid
8
spleen
Project
78
AMP
40
HPAP
Genome assembly (visualization)
70
GRCh38
61
hg19
Lab
78
AMP-T2D consortium
40
Klaus Kaestner, Upenn
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_slims!
DNA accessibility
assay_title!
MeRIP-seq
organ_slims!
epithelium
BIOSAMPLE
ASSAY
118 results
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Clear Filters
ChIP-seq
single cell RNA-seq
WGBS
cell line
HepG2
45
1
GM12878
15
primary cell
Langerhans cell
40
pancreatic cell
1
tissue
spleen
6
2
liver
4
body of pancreas
2
pancreas
2
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