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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
411
ChIP-seq
104
total RNA-seq
1
Hi-C
1
WGBS
Assay category
411
DNA binding
104
Transcription
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
356
transcription factor
88
recombinant protein
63
RNA binding protein
37
histone
37
histone modification
30
chromatin remodeller
19
narrow histone mark
18
broad histone mark
13
control
2
other context
2
other post-translational modification
Date released
268
November, 2017
83
February, 2021
57
November, 2018
27
December, 2018
22
August, 2021
20
January, 2019
18
October, 2019
12
November, 2019
5
March, 2020
5
May, 2021
Available data
570
bam
517
bigWig
427
fastq
392
bed narrowPeak
353
bigBed narrowPeak
118
tsv
58
bed broadPeak
58
bigBed broadPeak
20
tagAlign
3
tar
2
bed bed3+
2
bedpe bed3+
2
hic
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
517
Homo sapiens
Biosample type
1548
tissue
517
cell line
505
primary cell
246
in vitro differentiated cells
3
stem cell
Organ
332
liver
56
artery
56
blood vessel
56
heart
56
vasculature
54
blood
54
bodily fluid
53
pancreas
47
epithelium
11
kidney
8
embryo
Project
513
AMP
4
T1D
Genome assembly (visualization)
512
hg19
452
GRCh38
Lab
503
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
56
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
assay_slims!
DNA accessibility
assay_title!
RRBS
BIOSAMPLE
ASSAY
517 results
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ChIP-seq
total RNA-seq
Hi-C
WGBS
cell line
HepG2
326
5
1
smooth muscle cell of the coronary artery
4
52
GM12878
54
EndoC_BH1
13
33
H1-hESC
8
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