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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
987
total RNA-seq
907
ChIP-seq
179
single cell RNA-seq
87
RNA microarray
25
pCHi-C
15
WGBS
12
Hi-C
RRBS
4
MeRIP-seq
3
snDrop-seq
Assay category
1166
Transcription
907
DNA binding
DNA accessibility
15
DNA methylation
12
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
537
February, 2021
274
August, 2017
222
October, 2019
193
May, 2020
159
August, 2021
120
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
74
October, 2018
July, 2019
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
38
March, 2020
27
May, 2022
25
February, 2020
20
November, 2019
16
November, 2018
15
October, 2017
February, 2023
9
April, 2020
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
May, 2023
4
November, 2020
3
December, 2019
1
March, 2019
Available data
1606
bam
1493
bigWig
1024
tsv
595
bed narrowPeak
377
bigBed narrowPeak
333
fastq
238
tagAlign
152
txt
35
bed broadPeak
28
bed bed3+
11
hic
10
bedpe bed3+
8
bed bedMethyl
8
bigBed bedMethyl
6
csv
1
bedpe
1
tagAlign bed3+
Organism
2211
Homo sapiens
Biosample type
2219
tissue
692
primary cell
625
cell line
347
in vitro differentiated cells
10
stem cell
Organ
529
connective tissue
470
adipose tissue
412
pancreas
327
liver
230
heart
224
brain
146
kidney
142
bone element
85
blood vessel
85
vasculature
73
limb
40
nerve
37
musculature of body
32
artery
23
spleen
21
eye
10
lung
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
epithelium
1
esophagus
1
large intestine
1
lymph node
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2158
AMP
47
KPMP
9
LungMap
5
T1D
Genome assembly (visualization)
1469
GRCh38
1411
hg19
Lab
2027
AMP-T2D consortium
61
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
9
Xin Sun, UCSD
8
Kyle Gaulton, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
89
inconsistent ontology term
27
inconsistent control
7
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_slims!
DNA accessibility
assay_title!
RRBS
month_released!
February, 2023
July, 2019
BIOSAMPLE
ASSAY
2219 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
RNA microarray
pCHi-C
WGBS
Hi-C
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
2
1
3
islet of Langerhans
287
71
6
4
3
4
liver
165
145
1
1
3
1
kidney
49
27
64
1
bone element
84
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