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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
892
ChIP-seq
180
single cell RNA-seq
87
RNA microarray
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
RRBS
3
snDrop-seq
Assay category
1227
Transcription
892
DNA binding
DNA accessibility
27
DNA methylation
16
3D chromatin structure
Target of assay
616
histone modification
615
histone
322
narrow histone mark
293
broad histone mark
182
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
537
February, 2021
274
August, 2017
222
October, 2019
193
May, 2020
159
August, 2021
120
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
74
October, 2018
63
July, 2019
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
38
March, 2020
27
May, 2022
25
February, 2020
20
November, 2019
16
November, 2018
October, 2017
14
February, 2023
9
April, 2020
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
May, 2023
November, 2020
3
December, 2019
1
March, 2019
Available data
1654
bam
1542
bigWig
1075
tsv
589
bed narrowPeak
371
bigBed narrowPeak
324
fastq
224
tagAlign
156
txt
32
bed broadPeak
28
bed bed3+
16
bed bedMethyl
16
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
2269
Homo sapiens
Biosample type
2277
tissue
786
primary cell
625
cell line
351
in vitro differentiated cells
10
stem cell
Organ
539
connective tissue
480
adipose tissue
417
pancreas
335
liver
246
heart
217
brain
148
kidney
146
bone element
90
blood vessel
90
vasculature
78
limb
44
musculature of body
40
nerve
32
artery
25
eye
23
spleen
10
lung
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2211
AMP
47
KPMP
10
T1D
9
LungMap
Genome assembly (visualization)
1518
GRCh38
1452
hg19
Lab
2084
AMP-T2D consortium
61
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
13
Kyle Gaulton, UCSD
9
Xin Sun, UCSD
3
Bing Ren, UCSD
Audit category:
89
inconsistent ontology term
27
inconsistent control
7
audit script error
Audit category:
22
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_slims!
DNA accessibility
assay_title!
RRBS
month_released!
November, 2020
October, 2017
BIOSAMPLE
ASSAY
2277 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
Hi-C
small RNA-seq
snDrop-seq
tissue
adipose tissue
382
2
3
1
islet of Langerhans
292
71
6
4
3
liver
167
145
1
3
1
1
1
kidney
49
27
64
1
bone element
84
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