Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
85
ChIP-seq
Assay category
DNA accessibility
85
DNA binding
Target of assay
65
histone
65
histone modification
49
transcription factor
36
broad histone mark
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
57
November, 2017
24
August, 2017
2
October, 2017
2
October, 2019
Available data
2524
bam
2302
bigWig
1521
tsv
1142
fastq
896
bed narrowPeak
652
bigBed narrowPeak
224
tagAlign
157
txt
93
zippedFastqFolder
85
bed broadPeak
65
bigBed broadPeak
47
bed bed3+
23
bedpe bed3+
23
hic
9
bed bedMethyl
9
bigBed bedMethyl
8
csv
3
cool
3
tar
2
ibed
1
bedpe
1
hdf5
1
vcf
Organism
81
Homo sapiens
Biosample type
52
cell line
20
tissue
13
primary cell
Organ
52
liver
8
musculature of body
8
pancreas
7
brain
4
epithelium
4
vasculature
3
blood vessel
2
vein
Project
85
AMP
Genome assembly (visualization)
85
hg19
57
GRCh38
Lab
85
AMP-T2D consortium
Audit category:
1
missing controlled_by
Audit category:
8
inconsistent control read length
2
inconsistent assembly
assay_slims!
DNA accessibility
assay_title!
RRBS
month_released!
July, 2019
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
85 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
cell line
HepG2
52
tissue
skeletal muscle tissue
8
islet of Langerhans
4
pancreas
4
brain
2
cingulate gyrus
1
+ See 1 more…
primary cell
skeletal muscle myoblast
8
endothelial cell of umbilical vein
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
See all biosamples
Download