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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
single cell RNA-seq
41
WGBS
Assay category
DNA accessibility
60
Transcription
41
DNA methylation
Date released
74
May, 2022
19
September, 2020
6
February, 2021
1
November, 2018
1
September, 2018
Available data
3003
bam
2819
bigWig
1586
tsv
1325
bed narrowPeak
1252
fastq
801
bigBed narrowPeak
398
tagAlign
157
txt
114
bed broadPeak
93
zippedFastqFolder
79
bigBed broadPeak
64
bed bed3+
23
bedpe bed3+
23
hic
17
bed bedMethyl
bigBed bedMethyl
8
csv
5
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
101
Homo sapiens
Biosample type
95
primary cell
6
tissue
Organ
41
epithelium
41
pancreas
5
kidney
1
liver
Project
93
HPAP
8
AMP
Lab
93
Klaus Kaestner, Upenn
8
AMP-T2D consortium
Audit category:
5
audit script error
assay_slims!
DNA accessibility
assay_title!
RRBS
files.file_type!
bigBed bedMethyl
BIOSAMPLE
ASSAY
101 results
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single cell RNA-seq
WGBS
primary cell
Langerhans cell
52
pancreatic alpha cell
25
pancreatic beta cell
16
pancreatic cell
2
tissue
kidney
5
liver
1
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