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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
17
total RNA-seq
4
small RNA-seq
3
Hi-C
single cell RNA-seq
2
RRBS
2
pCHi-C
Assay category
218
DNA binding
DNA accessibility
21
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
85
October, 2019
28
May, 2019
15
October, 2017
13
July, 2019
12
February, 2020
2
March, 2020
Available data
205
bam
184
bigWig
170
bed narrowPeak
118
tagAlign
94
bigBed narrowPeak
23
tsv
18
fastq
15
bed broadPeak
6
bigBed broadPeak
3
bed bed3+
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
tagAlign bed3+
Organism
246
Homo sapiens
Biosample type
233
tissue
13
primary cell
Organ
759
liver
693
pancreas
646
connective tissue
483
adipose tissue
331
epithelium
246
brain
223
heart
172
vasculature
168
blood vessel
147
bone element
125
kidney
90
artery
78
limb
60
blood
60
bodily fluid
60
musculature of body
40
nerve
37
embryo
eye
23
spleen
19
vein
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
246
AMP
Genome assembly (visualization)
180
GRCh38
137
hg19
Lab
246
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_slims!
DNA accessibility
assay_title!
STARR-seq
single cell RNA-seq
organ_slims!
eye
BIOSAMPLE
ASSAY
246 results
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ChIP-seq
total RNA-seq
small RNA-seq
Hi-C
RRBS
pCHi-C
tissue
layer of hippocampus
23
brain
20
1
1
substantia nigra
16
1
temporal lobe
15
1
1
caudate nucleus
15
1
+ See 70 more…
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
brain pericyte
1
See all biosamples
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