Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
10
total RNA-seq
STARR-seq
3
Hi-C
1
whole genome sequencing assay
Assay category
18
DNA binding
10
Transcription
3
3D chromatin structure
DNA accessibility
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
31
August, 2021
1
March, 2019
Available data
14
bed narrowPeak
14
bigWig
10
tsv
2
bedpe bed3+
2
hic
1
bedpe
1
vcf
Organism
32
Homo sapiens
Biosample type
29
cell line
3
tissue
Organ
29
liver
3
pancreas
Project
32
AMP
Genome assembly (visualization)
16
hg19
Lab
3342
AMP-T2D consortium
84
Kyle Gaulton, UCSD
61
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
32
Bing Ren, UCSD
20
Karen Mohlke, UNC
5
Rohit N. Kulkarni, M.D., Ph.D.
2
Struan F.A. Grant, CHOP
assay_slims!
DNA accessibility
assay_title!
STARR-seq
target.investigated_as!
nucleotide modification
BIOSAMPLE
ASSAY
32 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
Hi-C
whole genome sequencing assay
cell line
HepG2
18
9
1
1
tissue
islet of Langerhans
1
2
Download