Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
9
total RNA-seq
6
pCHi-C
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
3
MeRIP-seq
2
Capture-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
DNA accessibility
15
DNA binding
11
Transcription
4
3D chromatin structure
1
DNA sequencing
Target of assay
12
transcription factor
control
3
histone
3
histone modification
3
nucleotide modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
27
August, 2021
6
February, 2023
4
March, 2020
3
November, 2020
2
March, 2023
1
December, 2018
1
February, 2021
1
May, 2020
1
November, 2017
1
November, 2019
1
October, 2019
1
October, 2022
Available data
504
bigWig
bam
392
bed narrowPeak
365
fastq
353
bigBed narrowPeak
118
tsv
58
bed broadPeak
58
bigBed broadPeak
16
tagAlign
3
tar
2
bed bed3+
2
bedpe bed3+
2
hic
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
45
Homo sapiens
Biosample type
625
tissue
302
primary cell
71
in vitro differentiated cells
49
cell line
7
stem cell
Organ
29
liver
8
pancreas
7
epithelium
2
kidney
1
mammary gland
Project
42
AMP
5
T1D
2
community
Genome assembly (visualization)
18
hg19
1
GRCh38
Lab
25
Bing Ren, UCSD
14
AMP-T2D consortium
5
Kyle Gaulton, UCSD
3
Rohit N. Kulkarni, M.D., Ph.D.
2
Anna Gloyn, Oxford
Audit category:
8
inconsistent ontology term
Audit category:
1
inconsistent assembly
assay_slims!
DNA accessibility
assay_title!
STARR-seq
files.file_type!
bam
target.investigated_as!
control
BIOSAMPLE
ASSAY
49 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
pCHi-C
Hi-C
CRISPR genome editing followed by DNA sequencing
MeRIP-seq
Capture-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
HepG2
15
9
2
2
1
EndoC_BH1
1
3
3
2
2
1
EndoC-BH1
1
1
MCF-7
1
MIN6
1
+ See 4 more…
See all biosamples
Download