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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
906
ChIP-seq
180
single cell RNA-seq
87
RNA microarray
27
WGBS
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
MeRIP-seq
3
snDrop-seq
Assay category
1227
Transcription
906
DNA binding
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
627
histone modification
626
histone
324
narrow histone mark
302
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
537
February, 2021
278
August, 2017
218
October, 2019
193
May, 2020
159
August, 2021
120
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
74
October, 2018
69
July, 2019
48
December, 2017
47
September, 2023
40
May, 2024
39
May, 2021
27
May, 2022
25
February, 2020
20
November, 2019
18
March, 2020
16
November, 2018
15
October, 2017
14
February, 2023
9
April, 2020
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
May, 2023
4
November, 2020
3
December, 2019
1
March, 2019
Available data
1661
bam
1547
bigWig
1055
tsv
594
bed narrowPeak
376
bigBed narrowPeak
335
fastq
237
tagAlign
156
txt
34
bed broadPeak
28
bed bed3+
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
2274
Homo sapiens
Biosample type
2281
tissue
781
primary cell
624
cell line
346
in vitro differentiated cells
6
stem cell
Organ
538
connective tissue
479
adipose tissue
421
pancreas
335
liver
244
heart
231
brain
149
kidney
146
bone element
89
blood vessel
89
vasculature
78
limb
47
musculature of body
40
nerve
32
artery
22
spleen
21
eye
9
lung
4
gonad
4
ovary
4
skeleton
3
epithelium
1
lymph node
1
pericardium
1
pituitary gland
1
spinal cord
Project
2216
AMP
47
KPMP
9
LungMap
9
T1D
Genome assembly (visualization)
1523
GRCh38
1466
hg19
Lab
2085
AMP-T2D consortium
61
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
12
Kyle Gaulton, UCSD
9
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
87
inconsistent ontology term
27
inconsistent control
7
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
inconsistent assembly
assay_slims!
DNA accessibility
assay_title!
pCHi-C
audit.WARNING.category!
inconsistent assembly
files.file_type!
ibed
BIOSAMPLE
ASSAY
2281 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
RNA microarray
WGBS
Hi-C
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
2
3
islet of Langerhans
292
71
6
3
1
4
liver
167
145
1
3
1
1
1
kidney
49
27
64
1
1
bone element
84
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