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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
total RNA-seq
62
ChIP-seq
6
MeRIP-seq
pCHi-C
5
STARR-seq
3
Hi-C
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
whole genome sequencing assay
Assay category
106
Transcription
62
DNA binding
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Target of assay
24
transcription factor
21
control
20
histone
20
histone modification
11
broad histone mark
9
narrow histone mark
7
recombinant protein
3
nucleotide modification
2
RNA binding protein
Date released
86
February, 2021
44
August, 2021
28
October, 2019
15
November, 2019
6
November, 2020
4
May, 2021
2
March, 2020
1
February, 2023
1
October, 2022
Available data
566
bam
513
bigWig
fastq
390
bed narrowPeak
353
bigBed narrowPeak
111
tsv
58
bed broadPeak
58
bigBed broadPeak
20
tagAlign
3
tar
2
bedpe bed3+
2
hic
1
bed bed3+
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
185
Homo sapiens
Biosample type
1881
tissue
207
in vitro differentiated cells
187
cell line
158
primary cell
Organ
68
pancreas
58
artery
58
blood vessel
58
heart
58
vasculature
55
epithelium
31
liver
16
kidney
8
embryo
Project
187
AMP
9
T1D
2
community
Genome assembly (visualization)
143
hg19
127
GRCh38
Lab
147
AMP-T2D consortium
34
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
67
inconsistent ontology term
Audit category:
1
inconsistent assembly
assay_slims!
DNA accessibility
assay_title!
pCHi-C
files.file_type!
fastq
BIOSAMPLE
ASSAY
187 results
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total RNA-seq
ChIP-seq
MeRIP-seq
STARR-seq
Hi-C
Capture-C
CRISPR genome editing followed by sgRNA sequencing
MPRA
whole genome sequencing assay
cell line
smooth muscle cell of the coronary artery
52
6
EndoC_BH1
31
13
6
1
2
1
HepG2
9
18
2
1
1
Panc1
13
1
H1-hESC
8
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