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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
65
single cell RNA-seq
59
total RNA-seq
41
WGBS
1
MPRA
Assay category
124
Transcription
DNA accessibility
41
DNA methylation
Date released
89
February, 2021
80
May, 2022
57
August, 2021
19
September, 2020
4
February, 2023
1
October, 2022
Available data
3002
bam
2819
bigWig
1555
tsv
1325
bed narrowPeak
1255
fastq
801
bigBed narrowPeak
398
tagAlign
157
txt
114
bed broadPeak
93
zippedFastqFolder
79
bigBed broadPeak
62
bed bed3+
36
bed bedMethyl
36
bigBed bedMethyl
23
hic
20
bedpe bed3+
8
csv
5
hdf5
3
cool
3
tar
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
249
Homo sapiens
Biosample type
156
tissue
93
primary cell
1
cell line
Organ
88
bone element
62
kidney
47
pancreas
41
epithelium
4
skeleton
Project
157
AMP
93
HPAP
Lab
94
AMP-T2D consortium
93
Klaus Kaestner, Upenn
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
5
audit script error
assay_slims!
DNA accessibility
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
250 results
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RNA microarray
single cell RNA-seq
total RNA-seq
WGBS
MPRA
tissue
bone element
84
kidney
13
49
islet of Langerhans
6
acetabular part of hip bone
1
ilium
1
+ See 2 more…
primary cell
Langerhans cell
52
pancreatic alpha cell
25
pancreatic beta cell
16
cell line
MIN6
1
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