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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
569
ChIP-seq
189
total RNA-seq
6
Hi-C
5
WGBS
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
569
DNA binding
193
Transcription
DNA accessibility
7
DNA methylation
6
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
118
histone modification
117
histone
110
control
82
recombinant protein
66
narrow histone mark
58
RNA binding protein
51
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
193
May, 2020
63
December, 2017
52
August, 2017
50
November, 2018
35
August, 2021
24
October, 2019
20
May, 2022
10
July, 2019
5
December, 2019
5
January, 2019
3
March, 2020
1
December, 2018
1
February, 2020
1
February, 2021
Available data
690
bam
608
bigWig
461
fastq
423
bed narrowPeak
362
bigBed narrowPeak
172
tsv
86
tagAlign
60
bed broadPeak
60
bigBed broadPeak
7
bed bed3+
4
hic
3
bed bedMethyl
3
bedpe bed3+
3
bigBed bedMethyl
3
tar
1
csv
1
hdf5
1
vcf
Organism
778
Homo sapiens
Biosample type
398
cell line
335
tissue
30
primary cell
15
in vitro differentiated cells
Organ
772
pancreas
759
liver
645
connective tissue
481
adipose tissue
401
epithelium
313
heart
247
brain
189
kidney
177
vasculature
173
blood vessel
146
bone element
92
artery
78
limb
60
blood
60
bodily fluid
60
musculature of body
40
nerve
37
embryo
25
eye
22
spleen
19
vein
9
lung
4
gonad
4
ovary
4
skeleton
2
pericardium
1
lymph node
pituitary gland
1
spinal cord
Project
778
AMP
Genome assembly (visualization)
610
hg19
533
GRCh38
Lab
727
AMP-T2D consortium
31
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
audit script error
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
assay_slims!
DNA accessibility
assay_title!
pCHi-C
organ_slims!
pituitary gland
BIOSAMPLE
ASSAY
778 results
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Clear Filters
ChIP-seq
total RNA-seq
Hi-C
WGBS
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
378
14
2
1
2
1
tissue
liver
145
167
1
3
1
1
1
right lobe of liver
10
3
1
2
primary cell
endothelial cell of umbilical vein
17
2
hepatocyte
4
5
1
endothelial cell of hepatic sinusoid
1
in vitro differentiated cells
hepatocyte
15
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