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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ChIP-seq
4
Hi-C
2
RRBS
2
total RNA-seq
1
WGBS
1
pCHi-C
single cell RNA-seq
Assay category
12
DNA binding
4
3D chromatin structure
3
DNA methylation
2
Transcription
Target of assay
6
control
6
histone
6
histone modification
4
broad histone mark
2
narrow histone mark
Date released
11
August, 2017
5
July, 2019
2
February, 2020
2
June, 2019
1
March, 2020
1
May, 2019
Available data
4
bam
3
tsv
2
tagAlign
1
bed bedMethyl
1
bigBed bedMethyl
1
bigWig
Organism
22
Homo sapiens
Biosample type
20
tissue
2
primary cell
Organ
194
pancreas
164
liver
140
epithelium
109
brain
94
connective tissue
89
bone element
74
heart
71
kidney
65
adipose tissue
29
blood vessel
29
vasculature
26
eye
26
limb
22
musculature of body
12
nerve
11
artery
11
spleen
8
embryo
6
blood
6
bodily fluid
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
22
AMP
Genome assembly (visualization)
hg19
20
GRCh38
Lab
22
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
DNA accessibility
assay_title!
single cell RNA-seq
assembly!
hg19
files.file_type!
tagAlign bed3+
BIOSAMPLE
ASSAY
22 results
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Clear Filters
ChIP-seq
Hi-C
RRBS
total RNA-seq
WGBS
pCHi-C
tissue
skeletal muscle tissue
9
2
gastrocnemius medialis
4
1
muscle of leg
1
1
left ventricle myocardium
1
psoas muscle
1
primary cell
skeletal muscle cell
1
skeletal muscle satellite cell
1
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