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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
67
ChIP-seq
18
WGBS
6
total RNA-seq
Assay category
67
DNA binding
DNA accessibility
18
DNA methylation
6
Transcription
Target of assay
control
58
histone
58
histone modification
40
broad histone mark
18
narrow histone mark
9
transcription factor
4
RNA binding protein
4
recombinant protein
Date released
57
November, 2017
10
November, 2018
9
July, 2019
6
May, 2022
4
October, 2019
2
August, 2017
1
April, 2019
1
August, 2021
1
December, 2017
Available data
144
txt
133
fastq
118
bigWig
97
bed narrowPeak
94
tagAlign
91
bam
81
tsv
56
bigBed narrowPeak
41
zippedFastqFolder
17
bed bedMethyl
17
bigBed bedMethyl
2
bedpe bed3+
1
hic
1
vcf
Organism
91
Homo sapiens
Biosample type
76
tissue
10
cell line
3
primary cell
2
in vitro differentiated cells
Organ
52
brain
11
pancreas
9
liver
6
heart
5
blood vessel
5
vasculature
3
epithelium
3
vein
2
adipose tissue
2
connective tissue
2
spleen
1
embryo
1
kidney
1
limb
1
musculature of body
Project
91
AMP
Genome assembly (visualization)
2526
GRCh38
hg19
Lab
85
AMP-T2D consortium
6
Kyle Gaulton, UCSD
Audit category:
2
missing controlled_by
assay_slims!
DNA accessibility
assay_title!
single cell RNA-seq
assembly!
hg19
target.investigated_as!
control
BIOSAMPLE
ASSAY
91 results
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Clear Filters
ChIP-seq
WGBS
total RNA-seq
tissue
layer of hippocampus
16
caudate nucleus
11
substantia nigra
10
middle frontal area 46
9
islet of Langerhans
6
+ See 13 more…
cell line
HepG2
8
1
Panc1
1
primary cell
endothelial cell of umbilical vein
3
in vitro differentiated cells
neural progenitor cell
1
pancreatic endoderm
1
See all biosamples
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