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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
WGBS
1
pCHi-C
single cell RNA-seq
Assay category
39
DNA binding
DNA accessibility
8
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
26
August, 2017
10
July, 2019
10
June, 2019
7
May, 2019
5
March, 2020
2
February, 2020
Available data
34
bigWig
27
bed narrowPeak
24
bam
15
tagAlign
14
bigBed narrowPeak
13
bed broadPeak
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
Organism
60
Homo sapiens
Biosample type
47
tissue
13
primary cell
Organ
761
liver
693
pancreas
646
connective tissue
483
adipose tissue
331
epithelium
246
brain
223
heart
172
vasculature
168
blood vessel
147
bone element
90
artery
78
limb
77
kidney
60
blood
60
bodily fluid
60
musculature of body
nerve
37
embryo
29
eye
23
spleen
19
vein
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
60
AMP
Genome assembly (visualization)
38
hg19
20
GRCh38
Lab
60
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
assay_slims!
DNA accessibility
assay_title!
single cell RNA-seq
lab.title!
Katalin Susztak, Upenn
organ_slims!
nerve
BIOSAMPLE
ASSAY
60 results
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ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
WGBS
pCHi-C
tissue
skeletal muscle tissue
22
1
4
1
muscle of leg
7
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
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