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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
ChIP-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
pCHi-C
2
small RNA-seq
1
WGBS
single cell RNA-seq
Assay category
99
DNA binding
DNA accessibility
8
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
51
transcription factor
34
histone
34
histone modification
20
broad histone mark
14
narrow histone mark
12
control
10
RNA binding protein
10
chromatin remodeller
Date released
27
December, 2018
26
August, 2017
18
January, 2019
15
November, 2018
10
July, 2019
10
June, 2019
7
May, 2019
6
March, 2020
2
February, 2020
Available data
88
bigWig
84
bam
81
bed narrowPeak
68
bigBed narrowPeak
62
fastq
15
tagAlign
13
bed broadPeak
10
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
hic
Organism
121
Homo sapiens
Biosample type
61
cell line
47
tissue
13
primary cell
Organ
761
liver
693
pancreas
646
connective tissue
483
adipose tissue
331
epithelium
246
brain
223
heart
172
vasculature
168
blood vessel
147
bone element
127
kidney
90
artery
78
limb
60
blood
60
bodily fluid
60
musculature of body
40
nerve
37
embryo
29
eye
23
spleen
19
vein
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
121
AMP
Genome assembly (visualization)
92
hg19
74
GRCh38
Lab
121
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
inconsistent control
assay_slims!
DNA accessibility
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
121 results
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ChIP-seq
Hi-C
total RNA-seq
RRBS
pCHi-C
small RNA-seq
WGBS
cell line
GM12878
60
MCF-7
1
tissue
skeletal muscle tissue
22
1
4
1
muscle of leg
7
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
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