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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
6
Hi-C
6
total RNA-seq
3
RRBS
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
39
DNA binding
DNA accessibility
7
Transcription
6
3D chromatin structure
4
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
24
August, 2017
10
June, 2019
8
July, 2019
7
May, 2019
5
March, 2020
2
February, 2020
1
May, 2022
Available data
32
bigWig
27
bed narrowPeak
22
bam
15
tagAlign
14
bigBed narrowPeak
13
bed broadPeak
7
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
fastq
2
hic
Organism
57
Homo sapiens
Biosample type
45
tissue
12
primary cell
Organ
549
connective tissue
439
adipose tissue
315
heart
304
pancreas
298
liver
227
brain
172
vasculature
171
blood vessel
146
bone element
143
kidney
128
epithelium
92
artery
78
limb
57
musculature of body
40
nerve
29
eye
19
vein
10
embryo
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
57
AMP
Genome assembly (visualization)
34
hg19
18
GRCh38
Lab
57
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
assay_slims!
DNA accessibility
assay_title!
small RNA-seq
files.file_type!
fastq
BIOSAMPLE
ASSAY
57 results
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ChIP-seq
Hi-C
total RNA-seq
RRBS
WGBS
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
22
1
2
1
muscle of leg
7
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
8
1
skeletal muscle cell
2
1
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