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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
ChIP-seq
36
total RNA-seq
6
MeRIP-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
1
RNA microarray
Assay category
36
DNA binding
36
Transcription
DNA accessibility
1
3D chromatin structure
Target of assay
26
histone
26
histone modification
13
broad histone mark
13
narrow histone mark
9
control
4
transcription factor
3
RNA binding protein
3
nucleotide modification
1
chromatin remodeller
Date released
26
February, 2021
19
December, 2017
15
November, 2019
10
May, 2021
6
November, 2020
3
February, 2023
March, 2020
2
August, 2021
1
December, 2019
1
October, 2019
Available data
70
bam
64
bigWig
37
tsv
30
bed narrowPeak
19
fastq
14
bigBed narrowPeak
3
tagAlign
1
bedpe bed3+
1
hic
Organism
82
Homo sapiens
Biosample type
primary cell
56
cell line
24
in vitro differentiated cells
3
tissue
Organ
745
liver
615
connective tissue
486
pancreas
478
adipose tissue
298
heart
227
brain
164
kidney
146
bone element
145
blood vessel
145
vasculature
90
artery
83
epithelium
78
limb
60
blood
60
bodily fluid
42
musculature of body
40
nerve
37
embryo
25
eye
22
spleen
9
lung
4
gonad
4
ovary
4
skeleton
1
lymph node
1
pericardium
1
pituitary gland
1
spinal cord
1
thymus
Project
82
AMP
1
T1D
Genome assembly (visualization)
65
hg19
64
GRCh38
Lab
77
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
59
inconsistent ontology term
1
audit script error
Audit category:
1
inconsistent control read length
assay_slims!
DNA accessibility
assay_title!
small RNA-seq
biosample_type!
primary cell
month_released!
March, 2020
BIOSAMPLE
ASSAY
83 results
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ChIP-seq
total RNA-seq
MeRIP-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
Hi-C
RNA microarray
cell line
EndoC_BH1
14
31
6
2
1
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
hepatocyte
15
Hepatic endoderm
4
pancreatic PP cell
3
endothelial cell
1
intermediate endothelial cell
1
tissue
pigmented layer of retina
2
renal glomerulus
1
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