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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
49
ChIP-seq
6
WGBS
3
pCHi-C
small RNA-seq
1
RNA microarray
Assay category
398
Transcription
49
DNA binding
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
50
August, 2017
9
July, 2019
5
October, 2018
2
February, 2020
2
March, 2020
1
August, 2018
1
August, 2021
1
May, 2023
Available data
416
bigWig
415
bam
399
tsv
22
fastq
7
bed narrowPeak
7
tagAlign
6
bigBed narrowPeak
4
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
1
bed broadPeak
1
bedpe bed3+
Organism
456
Homo sapiens
Biosample type
455
tissue
1
in vitro differentiated cells
1
primary cell
Organ
718
pancreas
651
liver
612
connective tissue
456
adipose tissue
371
epithelium
295
heart
214
brain
178
kidney
156
vasculature
153
blood vessel
147
bone element
83
artery
61
limb
54
blood
54
bodily fluid
53
musculature of body
30
embryo
29
nerve
28
eye
17
vein
15
spleen
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
457
AMP
Genome assembly (visualization)
416
GRCh38
415
hg19
Lab
457
AMP-T2D consortium
Audit category:
12
missing controlled_by
assay_slims!
DNA accessibility
assay_title!
small RNA-seq
target.investigated_as!
control
BIOSAMPLE
ASSAY
457 results
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total RNA-seq
ChIP-seq
WGBS
pCHi-C
RNA microarray
tissue
adipose tissue
382
1
3
1
subcutaneous abdominal adipose tissue
31
3
white adipose tissue
12
subcutaneous adipose tissue
7
2
1
omental fat pad
5
3
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in vitro differentiated cells
white fat cell
1
primary cell
mesenchymal stem cell of adipose
1
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