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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
total RNA-seq
187
single cell RNA-seq
47
WGBS
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
Assay category
DNA accessibility
279
DNA binding
189
Transcription
58
DNA methylation
10
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
138
May, 2021
74
May, 2022
54
August, 2017
48
July, 2018
43
April, 2018
40
September, 2020
33
September, 2018
31
June, 2019
25
October, 2019
19
February, 2021
18
July, 2019
9
November, 2017
5
May, 2019
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
1
March, 2020
1
March, 2023
1
November, 2018
Available data
353
bigWig
345
bam
229
fastq
226
bed narrowPeak
108
tsv
100
tagAlign
93
zippedFastqFolder
57
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
8
bed bed3+
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
Organism
553
Homo sapiens
Biosample type
1276
tissue
553
primary cell
518
cell line
215
in vitro differentiated cells
10
stem cell
Organ
222
epithelium
194
pancreas
28
vasculature
24
blood vessel
21
connective tissue
19
vein
18
kidney
16
brain
12
musculature of body
6
heart
6
liver
4
eye
1
adipose tissue
1
bone element
1
bone marrow
Project
317
AMP
135
HPAP
100
T1D
1
ITG
Genome assembly (visualization)
369
hg19
310
GRCh38
Lab
284
AMP-T2D consortium
135
Klaus Kaestner, Upenn
133
Kyle Gaulton, UCSD
1
ITG
Audit category:
35
inconsistent ontology term
4
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA accessibility
assay_title!
total RNA-seq
lab.title!
Mark McCarthy, Oxford
BIOSAMPLE
ASSAY
553 results
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ChIP-seq
single cell RNA-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
primary cell
monocyte
85
1
1
Langerhans cell
85
pancreatic alpha cell
13
12
31
1
pancreatic beta cell
13
12
16
1
CD8-positive, alpha-beta T cell
33
1
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