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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
ChIP-seq
total RNA-seq
2
WGBS
1
GRO-seq
1
pCHi-C
Assay category
42
DNA binding
DNA accessibility
2
DNA methylation
Target of assay
18
histone
18
histone modification
15
control
10
narrow histone mark
9
transcription factor
8
broad histone mark
3
other context
3
other post-translational modification
Date released
13
December, 2017
9
February, 2018
8
November, 2018
7
December, 2018
7
January, 2019
1
January, 2018
1
March, 2020
Available data
45
fastq
44
bam
29
bigWig
26
bed narrowPeak
12
bigBed narrowPeak
3
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
1
tsv
Organism
46
Homo sapiens
Biosample type
23
in vitro differentiated cells
23
tissue
Organ
573
liver
376
pancreas
270
epithelium
244
heart
232
brain
176
connective tissue
131
kidney
117
vasculature
113
blood vessel
85
adipose tissue
85
bone element
71
limb
60
blood
60
bodily fluid
55
musculature of body
36
artery
35
nerve
23
embryo
23
spleen
19
vein
10
eye
10
lung
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
small intestine
1
stomach
1
urinary bladder
Project
46
AMP
Genome assembly (visualization)
29
GRCh38
27
hg19
1
hg18
Lab
46
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
assay_slims!
DNA accessibility
assay_title!
total RNA-seq
files.file_type!
ibed
BIOSAMPLE
ASSAY
46 results
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ChIP-seq
WGBS
GRO-seq
pCHi-C
in vitro differentiated cells
pancreatic endoderm
18
1
Hepatic endoderm
4
tissue
spleen
20
2
1
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