Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
total RNA-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
154
DNA binding
DNA accessibility
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
171
May, 2021
5
February, 2023
Available data
117
bigWig
114
bed narrowPeak
84
bam
84
tagAlign
Organism
176
Homo sapiens
Biosample type
133
primary cell
37
in vitro differentiated cells
5
cell line
1
tissue
Organ
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
106
T1D
70
AMP
Genome assembly (visualization)
117
hg19
84
GRCh38
Lab
2035
AMP-T2D consortium
176
Kyle Gaulton, UCSD
135
Klaus Kaestner, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
26
Bing Ren, UCSD
12
Katalin Susztak, Upenn
10
Rohit N. Kulkarni, M.D., Ph.D.
9
Xin Sun, UCSD
4
Anna Gloyn, Oxford
2
Struan F.A. Grant, CHOP
1
ITG
Audit category:
1
inconsistent ontology term
assay_slims!
DNA accessibility
assay_title!
total RNA-seq
files.file_type!
vcf
month_released!
October, 2018
BIOSAMPLE
ASSAY
176 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
84
1
CD8-positive, alpha-beta T cell
33
1
CD4-positive, alpha-beta T cell
2
B cell
1
activated CD4-positive, alpha-beta T cell
1
+ See 10 more…
in vitro differentiated cells
embryonic stem cell
37
cell line
EndoC_BH1
3
2
tissue
thymus
1
See all biosamples
Download