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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
165
ChIP-seq
17
pCHi-C
1
DNAme array
Assay category
165
DNA binding
DNA accessibility
1
DNA methylation
Target of assay
140
histone
140
histone modification
76
broad histone mark
64
narrow histone mark
16
transcription factor
9
control
5
RNA binding protein
Date released
406
November, 2017
311
August, 2017
251
October, 2019
183
May, 2021
162
August, 2021
121
February, 2021
120
May, 2019
94
December, 2017
80
April, 2019
78
November, 2018
75
May, 2022
October, 2018
56
July, 2019
51
May, 2020
49
April, 2018
48
July, 2018
47
September, 2023
45
March, 2020
40
May, 2024
40
September, 2020
35
December, 2018
33
September, 2018
31
June, 2019
25
January, 2019
24
February, 2018
15
November, 2019
15
October, 2017
10
November, 2020
9
April, 2020
7
February, 2023
6
September, 2017
5
December, 2019
5
January, 2018
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
3
May, 2023
1
March, 2019
Available data
123
bigWig
120
bed narrowPeak
91
bam
90
tagAlign
Organism
183
Homo sapiens
Biosample type
138
primary cell
43
in vitro differentiated cells
1
cell line
1
tissue
Organ
4
epithelium
4
pancreas
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
102
T1D
81
AMP
Genome assembly (visualization)
123
hg19
90
GRCh38
Lab
171
Kyle Gaulton, UCSD
12
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
assay_slims!
DNA accessibility
assay_title!
total RNA-seq
files.file_type!
vcf
month_released!
October, 2018
BIOSAMPLE
ASSAY
183 results
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Clear Filters
ChIP-seq
pCHi-C
DNAme array
primary cell
monocyte
85
1
1
CD8-positive, alpha-beta T cell
33
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
neutrophil
1
1
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in vitro differentiated cells
embryonic stem cell
37
cardiomyocytes
3
pancreatic PP cell
3
cell line
EndoC_BH1
1
tissue
thymus
1
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