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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
4
RRBS
total RNA-seq
2
Hi-C
1
pCHi-C
1
single cell RNA-seq
Assay category
39
DNA binding
DNA accessibility
4
DNA methylation
2
3D chromatin structure
1
Transcription
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
26
August, 2017
10
June, 2019
July, 2019
7
May, 2019
3
March, 2020
1
May, 2022
Available data
27
bed narrowPeak
27
bigWig
17
bam
15
tagAlign
14
bigBed narrowPeak
13
bed broadPeak
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
fastq
2
hic
1
tsv
Organism
47
Homo sapiens
Biosample type
37
tissue
10
primary cell
Organ
567
liver
372
pancreas
262
epithelium
233
heart
220
brain
171
connective tissue
126
kidney
112
vasculature
109
blood vessel
85
bone element
82
adipose tissue
66
limb
60
blood
60
bodily fluid
47
musculature of body
36
artery
35
nerve
23
embryo
23
spleen
19
vein
10
lung
9
eye
5
gonad
5
ovary
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
stomach
1
urinary bladder
Project
47
AMP
Genome assembly (visualization)
31
hg19
13
GRCh38
Lab
47
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
assay_slims!
DNA accessibility
assay_title!
total RNA-seq
month_released!
July, 2019
organ_slims!
intestine
BIOSAMPLE
ASSAY
47 results
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ChIP-seq
RRBS
Hi-C
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
22
4
1
muscle of leg
7
psoas muscle
2
1
primary cell
skeletal muscle satellite cell
8
skeletal muscle cell
2
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