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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
total RNA-seq
23
ChIP-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
106
Transcription
DNA accessibility
23
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
histone
20
histone modification
12
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
318
November, 2017
143
August, 2021
121
February, 2021
113
August, 2017
78
November, 2018
75
May, 2022
63
December, 2017
56
July, 2019
55
October, 2019
49
April, 2018
48
July, 2018
47
September, 2023
44
October, 2018
43
May, 2021
42
March, 2020
40
September, 2020
35
December, 2018
28
May, 2019
24
May, 2020
20
April, 2019
18
January, 2019
12
June, 2019
10
November, 2020
9
April, 2020
8
February, 2018
7
February, 2023
6
September, 2017
5
December, 2019
5
January, 2018
5
March, 2023
5
May, 2024
5
November, 2019
4
August, 2018
4
October, 2022
3
June, 2018
3
May, 2023
3
October, 2017
1
March, 2019
1
September, 2018
Available data
98
tsv
11
bed narrowPeak
11
bigWig
8
bam
8
tagAlign
8
txt
2
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
142
Homo sapiens
Biosample type
109
tissue
24
cell line
9
in vitro differentiated cells
1
primary cell
Organ
92
heart
20
liver
11
kidney
6
blood vessel
6
vasculature
3
connective tissue
3
epithelium
3
pancreas
2
artery
1
adipose tissue
Project
143
AMP
Genome assembly (visualization)
15
hg19
Lab
109
AMP-T2D consortium
23
Bing Ren, UCSD
9
Katalin Susztak, Upenn
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
assay_slims!
DNA accessibility
assay_title!
total RNA-seq
target.investigated_as!
histone
BIOSAMPLE
ASSAY
143 results
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single cell RNA-seq
ChIP-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
kidney
8
1
+ See 11 more…
cell line
HepG2
15
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
7
adipocyte
1
osteoblast
1
primary cell
hepatocyte
1
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