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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
399
total RNA-seq
73
ChIP-seq
6
WGBS
3
small RNA-seq
2
pCHi-C
1
RNA microarray
1
RRBS
Assay category
402
Transcription
73
DNA binding
DNA accessibility
7
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
56
August, 2017
23
October, 2018
14
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
March, 2020
1
May, 2023
Available data
438
bam
420
bigWig
402
tsv
41
fastq
8
tagAlign
7
bed narrowPeak
6
bigBed narrowPeak
4
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
1
bed broadPeak
1
bedpe bed3+
Organism
484
Homo sapiens
Biosample type
481
tissue
3
primary cell
1
in vitro differentiated cells
Organ
773
pancreas
761
liver
650
connective tissue
483
adipose tissue
401
epithelium
316
heart
249
brain
191
kidney
178
vasculature
174
blood vessel
147
bone element
92
artery
78
limb
61
musculature of body
60
blood
60
bodily fluid
40
nerve
37
embryo
29
eye
23
spleen
19
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
485
AMP
Genome assembly (visualization)
420
GRCh38
420
hg19
Lab
485
AMP-T2D consortium
Audit category:
12
missing controlled_by
assay_slims!
DNA accessibility
assay_title!
whole genome sequencing assay
month_released!
January, 2021
BIOSAMPLE
ASSAY
485 results
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total RNA-seq
ChIP-seq
WGBS
small RNA-seq
pCHi-C
RNA microarray
RRBS
tissue
adipose tissue
382
2
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
omental fat pad
5
11
1
white adipose tissue
12
+ See 2 more…
primary cell
mesenchymal stem cell of adipose
1
1
pericardium fibroblast
1
in vitro differentiated cells
white fat cell
1
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