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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
single cell RNA-seq
60
total RNA-seq
52
ChIP-seq
4
RRBS
3
snDrop-seq
2
RNA microarray
2
STARR-seq
2
pCHi-C
1
Hi-C
1
small RNA-seq
Assay category
52
DNA binding
1
3D chromatin structure
Target of assay
30
histone
30
histone modification
15
broad histone mark
15
narrow histone mark
12
control
10
transcription factor
7
recombinant protein
3
RNA binding protein
Date released
23
April, 2019
21
October, 2019
5
May, 2019
3
June, 2019
1
August, 2021
Available data
52
bam
39
bed narrowPeak
39
bigWig
24
bigBed narrowPeak
1
hic
Organism
53
Homo sapiens
Biosample type
28
tissue
15
primary cell
10
cell line
Organ
556
liver
227
pancreas
221
brain
154
connective tissue
137
epithelium
137
heart
107
vasculature
104
blood vessel
73
adipose tissue
70
limb
60
blood
60
bodily fluid
53
kidney
45
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
19
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
53
AMP
Genome assembly (visualization)
40
hg19
39
GRCh38
Lab
52
AMP-T2D consortium
1
Katalin Susztak, Upenn
Audit category:
16
inconsistent ontology term
assay_slims!
DNA accessibility
month_released!
August, 2022
BIOSAMPLE
ASSAY
53 results
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ChIP-seq
Hi-C
tissue
kidney
27
1
primary cell
epithelial cell of proximal tubule
10
kidney epithelial cell
5
cell line
RCC 7860 HIF1a re-expression
4
RCC 7860 HIF2a over-expression
3
RCC 7860 vector
3
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