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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
115
total RNA-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
154
DNA binding
115
Transcription
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
213
May, 2021
45
May, 2020
6
May, 2022
5
February, 2023
Available data
215
bigWig
186
bam
114
bed narrowPeak
96
tsv
84
tagAlign
6
fastq
6
txt
2
bed bed3+
Organism
269
Homo sapiens
Biosample type
215
primary cell
42
in vitro differentiated cells
12
tissue
Organ
12
pancreas
Project
185
T1D
84
AMP
Genome assembly (visualization)
215
hg19
180
GRCh38
Lab
2900
AMP-T2D consortium
269
Kyle Gaulton, UCSD
49
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
28
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
4
inconsistent ontology term
assay_slims!
DNA accessibility
award.project!
HPAP
BIOSAMPLE
ASSAY
269 results
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ChIP-seq
total RNA-seq
primary cell
monocyte
84
53
CD8-positive, alpha-beta T cell
33
4
B cell
2
T follicular helper cell
2
T-helper 1 cell
2
+ See 20 more…
in vitro differentiated cells
embryonic stem cell
37
5
tissue
islet of Langerhans
11
pancreas
1
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