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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
535
total RNA-seq
241
ChIP-seq
71
single cell RNA-seq
54
WGBS
14
Hi-C
11
RRBS
6
MeRIP-seq
5
small RNA-seq
3
pCHi-C
2
Capture-C
2
RNA microarray
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
14
3D chromatin structure
Date released
6
July, 2019
3
March, 2020
3
October, 2022
1
November, 2019
1
October, 2019
Available data
8
hic
7
bedpe bed3+
3
cool
2
bed bed3+
2
bigWig
2
hdf5
Organism
14
Homo sapiens
Biosample type
7
primary cell
6
tissue
1
cell line
Organ
9
pancreas
8
epithelium
6
musculature of body
5
blood vessel
5
vasculature
4
limb
4
liver
3
brain
3
heart
2
vein
1
connective tissue
1
kidney
0
adipose tissue
Project
11
AMP
3
HPAP
Genome assembly (visualization)
10
hg19
Lab
11
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
4
audit script error
1
inconsistent ontology term
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
14 results
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Hi-C
primary cell
endothelial cell of umbilical vein
2
brain microvascular endothelial cell
1
endothelial cell of hepatic sinusoid
1
pancreatic acinar cell
1
pancreatic alpha cell
1
+ See 1 more…
tissue
gastrocnemius medialis
4
psoas muscle
2
cell line
EndoC_BH1
1
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