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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1729
ChIP-seq
1460
total RNA-seq
363
single cell RNA-seq
87
RNA microarray
72
WGBS
56
pCHi-C
25
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
72
DNA methylation
Date released
41
May, 2022
9
August, 2017
9
July, 2019
7
November, 2018
6
February, 2021
Available data
41
zippedFastqFolder
17
fastq
15
bam
15
bed bedMethyl
15
bigBed bedMethyl
15
bigWig
6
tsv
Organism
72
Homo sapiens
Biosample type
47
primary cell
24
tissue
1
cell line
Organ
51
pancreas
47
epithelium
8
heart
6
adipose tissue
6
connective tissue
5
liver
blood vessel
2
spleen
2
vasculature
limb
1
musculature of body
Project
47
HPAP
25
AMP
Genome assembly (visualization)
15
GRCh38
Lab
47
Klaus Kaestner, Upenn
25
AMP-T2D consortium
assay_slims!
DNA accessibility
organ_slims!
blood vessel
limb
nerve
BIOSAMPLE
ASSAY
72 results
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WGBS
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
tissue
heart left ventricle
4
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
body of pancreas
2
+ See 6 more…
cell line
HepG2
1
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