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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
105
ChIP-seq
70
single cell RNA-seq
47
WGBS
7
Hi-C
6
MeRIP-seq
6
RRBS
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
RNA microarray
Assay category
127
Transcription
Date released
39
February, 2023
26
February, 2021
26
September, 2018
16
September, 2020
6
May, 2021
5
December, 2019
4
July, 2019
October, 2019
2
March, 2020
2
October, 2018
1
November, 2019
Available data
81
fastq
74
tsv
72
bam
72
bigWig
Organism
127
Homo sapiens
Biosample type
90
primary cell
33
cell line
2
in vitro differentiated cells
2
tissue
Organ
474
connective tissue
398
adipose tissue
397
pancreas
188
liver
128
epithelium
heart
62
bone element
61
blood vessel
61
vasculature
56
artery
54
kidney
16
brain
14
embryo
6
musculature of body
5
eye
4
skeleton
3
limb
1
nerve
1
pericardium
1
spinal cord
Project
72
AMP
53
HPAP
2
T1D
Genome assembly (visualization)
72
GRCh38
72
hg19
Lab
74
AMP-T2D consortium
53
Klaus Kaestner, Upenn
Audit category:
34
inconsistent ontology term
assay_slims!
DNA accessibility
month_released!
October, 2019
organ_slims!
heart
BIOSAMPLE
ASSAY
127 results
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total RNA-seq
primary cell
pancreatic alpha cell
52
pancreatic beta cell
21
hepatocyte
5
pancreatic acinar cell
4
pancreatic ductal cell
4
+ See 4 more…
cell line
EndoC_BH1
33
in vitro differentiated cells
endothelial cell
1
intermediate endothelial cell
1
tissue
pigmented layer of retina
2
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