Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
72
ChIP-seq
17
pCHi-C
10
RRBS
6
Hi-C
5
total RNA-seq
2
single cell RNA-seq
1
DNAme array
Assay category
DNA accessibility
72
DNA binding
11
DNA methylation
7
Transcription
6
3D chromatin structure
Target of assay
39
histone
39
histone modification
32
control
26
broad histone mark
13
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
57
May, 2021
15
August, 2017
13
July, 2019
9
October, 2019
8
June, 2019
3
November, 2017
2
May, 2020
1
August, 2021
1
February, 2021
1
March, 2020
1
May, 2019
1
November, 2018
1
September, 2018
Available data
46
bigWig
36
bam
31
bed narrowPeak
20
fastq
10
bed bedMethyl
10
bigBed bedMethyl
7
bed bed3+
4
hdf5
3
bed broadPeak
3
bigBed broadPeak
2
csv
2
hic
2
tagAlign
1
bedpe bed3+
1
bigBed narrowPeak
Organism
113
Homo sapiens
Biosample type
783
tissue
179
cell line
113
primary cell
104
in vitro differentiated cells
7
stem cell
Organ
36
epithelium
14
vasculature
12
blood vessel
12
pancreas
9
vein
7
brain
7
connective tissue
6
kidney
3
heart
3
liver
3
musculature of body
2
eye
1
bone element
1
bone marrow
Project
97
AMP
16
T1D
Genome assembly (visualization)
518
hg19
GRCh38
Lab
Klaus Kaestner, Upenn
62
AMP-T2D consortium
51
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
1
audit script error
assay_slims!
DNA accessibility
assembly!
GRCh38
lab.title!
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
113 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
pCHi-C
RRBS
Hi-C
total RNA-seq
single cell RNA-seq
DNAme array
primary cell
CD8-positive, alpha-beta T cell
33
1
2
endothelial cell of umbilical vein
7
2
pancreatic alpha cell
6
pancreatic beta cell
6
monocyte
1
1
1
1
+ See 31 more…
See all biosamples
Download