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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
191
ChIP-seq
30
total RNA-seq
4
WGBS
3
Hi-C
3
pCHi-C
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
191
DNA binding
31
Transcription
DNA accessibility
6
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
107
control
52
transcription factor
33
histone
33
histone modification
19
narrow histone mark
14
broad histone mark
7
RNA binding protein
2
chromatin remodeller
recombinant protein
Date released
98
November, 2017
34
August, 2017
32
August, 2021
32
May, 2020
20
May, 2022
13
December, 2017
3
July, 2019
2
February, 2021
2
March, 2020
December, 2018
1
February, 2020
Available data
149
bam
120
fastq
74
bigWig
55
tagAlign
54
bed narrowPeak
32
bigBed narrowPeak
14
bed broadPeak
14
bigBed broadPeak
12
tsv
3
tar
2
bed bed3+
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
csv
1
hdf5
1
vcf
Organism
237
Homo sapiens
Biosample type
131
cell line
102
tissue
3
primary cell
1
in vitro differentiated cells
Organ
237
liver
205
pancreas
158
epithelium
140
kidney
127
heart
98
connective tissue
89
bone element
66
brain
64
adipose tissue
44
vasculature
42
blood vessel
41
musculature of body
27
eye
26
limb
13
artery
12
nerve
10
lung
9
vein
8
embryo
6
blood
6
bodily fluid
5
gonad
5
ovary
5
spleen
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
237
AMP
Genome assembly (visualization)
519
hg19
GRCh38
Lab
186
AMP-T2D consortium
31
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
7
missing controlled_by
Audit category:
4
inconsistent control read length
2
inconsistent control run_type
assay_slims!
DNA accessibility
assembly!
GRCh38
month_released!
December, 2018
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
237 results
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ChIP-seq
total RNA-seq
WGBS
Hi-C
pCHi-C
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
116
9
1
2
2
1
tissue
liver
70
20
3
1
1
1
1
right lobe of liver
3
1
1
primary cell
hepatocyte
1
1
endothelial cell of hepatic sinusoid
1
in vitro differentiated cells
hepatocyte
1
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