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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
single cell RNA-seq
49
total RNA-seq
13
ChIP-seq
3
snDrop-seq
2
RNA microarray
2
STARR-seq
2
pCHi-C
1
Hi-C
Assay category
113
Transcription
13
DNA binding
DNA accessibility
1
3D chromatin structure
Target of assay
12
control
1
RNA binding protein
1
transcription factor
Date released
60
August, 2021
47
September, 2023
8
February, 2021
6
October, 2019
5
April, 2019
July, 2019
3
December, 2019
3
May, 2023
2
March, 2020
1
June, 2019
1
May, 2019
Available data
62
txt
13
bam
12
tsv
5
csv
1
hic
Organism
136
Homo sapiens
Biosample type
126
tissue
7
cell line
3
primary cell
Organ
203
liver
188
pancreas
145
epithelium
136
kidney
122
heart
89
bone element
52
connective tissue
42
brain
35
vasculature
34
blood vessel
33
adipose tissue
24
eye
20
limb
16
musculature of body
13
artery
12
nerve
10
lung
9
spleen
7
embryo
6
blood
6
bodily fluid
4
skeleton
4
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
89
AMP
47
KPMP
Genome assembly (visualization)
16
hg19
GRCh38
Lab
61
Katalin Susztak, Upenn
47
KPMP
26
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
7
audit script error
7
inconsistent ontology term
assay_slims!
DNA accessibility
assembly!
GRCh38
month_released!
July, 2019
target.investigated_as!
histone
BIOSAMPLE
ASSAY
136 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
snDrop-seq
RNA microarray
STARR-seq
pCHi-C
Hi-C
tissue
kidney
64
49
7
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
kidney interstitium
1
+ See 1 more…
cell line
HEK293T
2
RCC 7860 vector
1
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 VHL
1
primary cell
epithelial cell of proximal tubule
2
kidney epithelial cell
1
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