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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
59
total RNA-seq
27
ChIP-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
165
Transcription
27
DNA binding
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Target of assay
12
control
11
transcription factor
4
histone
4
histone modification
2
broad histone mark
2
narrow histone mark
1
RNA binding protein
Date released
206
August, 2021
158
August, 2017
126
November, 2017
116
February, 2021
May, 2021
101
May, 2022
100
February, 2023
88
October, 2019
56
September, 2020
47
September, 2023
44
March, 2020
34
May, 2020
29
October, 2018
27
July, 2019
25
February, 2020
24
May, 2019
17
December, 2017
16
April, 2019
10
November, 2020
9
April, 2020
9
October, 2017
8
February, 2018
8
June, 2019
8
November, 2018
5
December, 2018
5
December, 2019
5
January, 2018
4
January, 2019
4
July, 2018
4
March, 2023
4
November, 2019
4
October, 2022
4
September, 2017
3
May, 2023
1
August, 2018
March, 2019
1
September, 2018
Available data
108
tsv
57
txt
14
bed narrowPeak
14
bigWig
8
bam
8
tagAlign
2
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
205
Homo sapiens
Biosample type
159
tissue
36
cell line
10
in vitro differentiated cells
1
primary cell
Organ
92
heart
60
kidney
32
liver
6
blood vessel
6
vasculature
4
pancreas
3
connective tissue
3
epithelium
2
artery
1
adipose tissue
Project
206
AMP
Genome assembly (visualization)
48
hg19
GRCh38
Lab
110
AMP-T2D consortium
58
Katalin Susztak, Upenn
36
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
assay_slims!
DNA accessibility
assembly!
GRCh38
month_released!
March, 2019
May, 2021
BIOSAMPLE
ASSAY
206 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
49
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
9
18
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
8
adipocyte
1
osteoblast
1
primary cell
hepatocyte
1
See all biosamples
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