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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
25
total RNA-seq
18
single cell RNA-seq
6
WGBS
3
ChIP-seq
3
snDrop-seq
2
pCHi-C
Assay category
43
Transcription
DNA accessibility
6
DNA methylation
3
DNA binding
Target of assay
3
control
Date released
206
August, 2021
158
August, 2017
126
November, 2017
116
February, 2021
102
May, 2021
101
May, 2022
100
February, 2023
88
October, 2019
56
September, 2020
47
September, 2023
44
March, 2020
34
May, 2020
29
October, 2018
27
July, 2019
25
February, 2020
24
May, 2019
17
December, 2017
16
April, 2019
10
November, 2020
9
April, 2020
9
October, 2017
8
February, 2018
8
June, 2019
7
November, 2018
5
December, 2018
5
December, 2019
5
January, 2018
4
January, 2019
4
July, 2018
4
March, 2023
4
November, 2019
4
October, 2022
4
September, 2017
3
May, 2023
1
August, 2018
1
March, 2019
1
September, 2018
Available data
89
txt
39
tsv
18
fastq
6
csv
4
bam
3
tagAlign
2
bed bed3+
Organism
141
Homo sapiens
Biosample type
118
tissue
19
primary cell
4
cell line
Organ
84
bone element
12
brain
8
kidney
7
pancreas
6
epithelium
5
blood vessel
5
heart
5
vasculature
4
artery
3
connective tissue
3
limb
3
liver
2
adipose tissue
2
musculature of body
1
eye
1
nerve
1
spinal cord
Project
123
AMP
18
HPAP
Genome assembly (visualization)
552
hg19
GRCh38
Lab
123
AMP-T2D consortium
18
Klaus Kaestner, Upenn
Audit category:
85
inconsistent ontology term
5
audit script error
assay_slims!
DNA accessibility
assembly!
GRCh38
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
141 results
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Clear Filters
RNA microarray
total RNA-seq
single cell RNA-seq
WGBS
ChIP-seq
snDrop-seq
pCHi-C
tissue
bone element
84
kidney
5
Ammon's horn
1
C1 segment of cervical spinal cord
1
amygdala
1
+ See 26 more…
primary cell
Langerhans cell
12
pancreatic alpha cell
6
osteoblast
1
cell line
smooth muscle cell of the coronary artery
2
HepG2
1
iPSC derived cell line
1
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